| CDY
| AF000981
| Y
|
| 27
| no
| AZFa, ampliconic
| CGI-137
| AF151895
| 5
|
| 2
| unknown
| Ampliconic
| CRSP2
| AB006651
| X
|
| 1
| no
| X-degenerate
| CTBP2
| AF016507
| 10
|
| 1
| yes
| Other
| EIF4A1
| D13748
| 17
|
| 1
| yes
| X-transposed
| FAM8A1
| AF097027
| 6
|
| 5
| yes
| 5' end is in AZFa, 3' end in ampliconic
| FLJ10842
| NM_018238
| 7
|
| 1
| unknown
| X-degenerate
| FLJ20167
| AK000174
| 5
|
| 1
| unknown
| X-degenerate
| FLJ21191
| AK024844
| X
|
| 1
| unknown
| X-degenerate
| GA
| X04098
| 3
|
| 2
| yes
| Ampliconic
| GADPH
| AF261085
| 12
|
| 1
| unknown
| X-degenerate
| GYG2
| AF179615
| X
| GYG2P
| 1
| no
| X-degenerate
| HS7 (HCS)
| M22877
| 7
|
| 1
| unknown
| X-degenerate
| HepG2
| D16888
| 2
|
| 1
| unknown
| Other
| KAL1
| M97252
| X
| KALP
| 1
| no
| X-degenerate
| KIAA0008
| D13633
| 14
|
| 1
| yes
| X-transposed
| KIAA0084
| D42043
| 3
|
| 1
| no
| Ampliconic
| KIAA0306
| AB002304
| 19
|
| 2
| yes
| Ampliconic
| KIAA0855
| AB020662
| 15
|
| 2
| no
| Ampliconic
| KIAA1096
| AB029019
| 1
|
| 1
| unknown
| X-transposed
| KRT18
| NM_000224
| 12
|
| 1
| yes
| X-transposed
| LCC
| AF055479
| 3
|
| 1
| unknown
| X-transposed
| NF-L
| X05608
| 8
|
| 1
| unknown
| X-degenerate
| OA1
| Z48804
| X
| OA1P
| 1
| no
| X-degenerate
| OFD1
| Y15164
| X
| OFD1P2
| 15
| no
| Ampliconic
| PPP1R12B
| AB003062
| 1
| PPP1R12BP
| 2
| no
| Ampliconic
| PRY
| AF000988
| Y
|
| 4
| no
| Ampliconic
| PSIP1
| AF063020
| 9
|
| 1
| unknown
| X-degenerate
| PSMA6
| X59417
| 14
|
| 1
| yes
| X-degenerate
| RBMY1
| X76060
| Y
|
| 22
| no
| Ampliconic
| RBMY2
| AF026564
| Y
|
| 4
| no
| Ampliconic
| RPL26
| NM_000987
| 17
|
| 1
| yes
| X-transposed
| RPL41
| AB010874
| 12
|
| 2
| unknown
| Ampliconic
| RPS24
| U12202
| 10
|
| 1
| unknown
| X-degenerate
| SFPQ
| X70944
| 1
|
| 1
| yes
| X-degenerate
| SH3P18
| U61167
| 2
|
| 4
| unknown
| Ampliconic
| SLC25A15
| NM_014252
| 13
| SLC25A15P
| 1
| no
| Other
| SMCY
| U52191
| Y
|
| 1
| no
| X-degenerate
| STS
| M16505
| X
| STSP
| 1
| no
| X-degenerate
| TBL1Y
| AF332220
| Y
|
| 1
| no
| X-degenerate
| TPTE
| AF007118
| 21
| TPTEP
| 1
| no
| Other
| TSPY
| M98525
| Y
|
| 5
| no
| Ampliconic
| TUB4q
| U83668
| 4
|
| 2
| unknown
| Ampliconic
| UBE2V1
| U49278
| 20
|
| 1
| yes
| X-transposed
| UBH1
| AF022789
| 13
|
| 1
| yes
| X-transposed
| USP9Y
| AF000986
| Y
|
| 29
| no
| Ampliconic
| VDAC1
| L06132
| 5
|
| 1
| yes
| X-transposed
| XG
| Z48519
| X
| XGPY
| 1
| no
| X-degenerate
| XKRY
| AF000997
| Y
|
| 6
| no
| Ampliconic
| ZNF43
| NM_003423
| 19
| ZNF381P
| 16
| no
| Ampliconic
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |