# Control file template for betavioplot.py # # Use '#' for comments at start of line or mid-line # INPUT/OUTPUT -- REQUIRED datafile: # file containing data outfile: # plot file to write # PLOT LABELS -- OPTIONAL ## surround in single or double quotes if there are spaces ## '#' not supported in labels #x_label: # x-axis label #y_label: # y-axis label #title: # plot title # PLOT PARAMETERS -- OPTIONAL #fig_height: 5 # figure height in inches (0 < fig_height) #fig_width: 7 # figure width in inches (0 < fig_width) #y_min: # the lower bound of the y-axis in the plot #y_max: # the upper bound of the y-axis in the plot #alpha: 0.5 # transparency (0 < alpha <= 1) #marker: o # see http://matplotlib.org/api/markers_api.html for options #col_default: k # default color when none specified; use 'hex_' prefix ## instead of '#' for hex colors; e.g., 'hex_123456' instead ## of '#123456'; 'dark9' rotates through nine ## preselected colors; 'dark2' rotates through the ## ColorBrewer Dark2 Qualitative palette with 8 colors ## (www.ColorBrewer.org); setting 'dark2' or 'dark9' will ## override any color choices made in the datafile #filled: False # ['True' | 'False'] whether points are filled #vert_labs: False # ['True' | 'False'] whether class labels are oriented ## vertically or horizontally (True => vertical) #show_median: True # whether to plot line at median of each class #med_color: k # color of median line; use 'hex_' prefix for hex colors #med_stroke: 0.75 # thickness of median line (stroke) (0 <= med_stroke) #taper: 14 # (1 <= taper) determines how strongly clusters of ## points taper to create violin shape; larger values ## give stronger taper; 1 causes no tapering