Supplementary Table 2: MSY noncoding transcription units

Transcription
unit symbol
Transcription unit name Alias Number
of
copies*
Tissue
expression
# of
exons
Length of
predicted
protein
(amino
acids)
First published reference GenBank
accession no.
Single copy
transcription units
TTTY16 Testis Transcript Y 16 1 Testis 2 31 this study AF527828
TTTY12 Testis Transcript Y 12 1 Testis 2 90 this study AF332241
TTTY18 Testis Transcript Y 18 1 Testis 2 44 this study AF527830
TTTY19 Testis Transcript Y 19 1 Testis 2 22 this study AF527831
TTTY11 Testis Transcript Y 11 1 Testis 5 119 this study AF332240
RBMY1A3P RNA binding motif Y 1 Testis 4 93 this study AF527837
TTTY20 Testis Transcript Y 20 1 Testis 2 39 this study AF527832
TTTY15 Testis Transcript Y 15 AZFaT1 1 Testis, brain 4 52 Sargent CA, et al. J. Med. Genet. 36, 670 (1999) AL080135
CYorf14 Chromosome Y open reading frame 14 PRO2834 1 Ubiquitous 2 113 GenBank AF119903
TTTY14 Testis Transcript Y 14 1 Fetal brain, kidney, testis 2 56 this study AF332243
TTTY10 Testis Transcript Y 10 1 Fetal brain, prostate, testis 7 68 this study AF332239
TTTY13 Testis Transcript Y 13 1 Testis 6 58 this study AF332242
TTTY5 Testis Transcript Y 5 1 Testis 2 75 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332236
Total: 13
Multicopy
transcription units
TTTY23 Testis Transcript Y 23 2 Testis 3 70 this study AF527836
TTTY22 Testis Transcript Y 22 2 Testis 2[5] 60 this study AF527834
TTTY1 Testis Transcript Y 1 TTY1 2 Testis 5 68 Lahn BT & Page DC. Science 278, 675 (1997) AF000990
TTTY2 Testis Transcript Y 2    TTY2   2 Testis 7 143 Lahn BT &Page DC. Science 278, 675 (1997) AF000991
TTTY21 Testis Transcript Y 21 2 Testis 2 16 this study AF527833
TTTY7 Testis Transcript Y 7 2 Testis 7 [6] 124 this study AF332232, AF332233
TTTY8 Testis Transcript Y 8 2 Testis 3 61 this study AF332234, AF332235
TTTY9 Testis Transcript Y 9 2 Testis 5 69 this study AF332238
TTTY6 Testis Transcript Y 6 2 Testis 3 95 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332237
TTTY17 Testis Transcript Y 17 3 Testis 2 37 this study AF527829
TTTY4 Testis Transcript Y 4 3 Testis, prostate 4 45 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332231
TTTY3 Testis Transcript Y 3 2 Testis 3 26 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332230
Total: 26
Transcription units with significant predicted open reading frames CYorf16 Chromosome Y open
reading frame 16
~35 Testis 4 114 this study AF527835
CSPG4LY Chondroitin sulfate proteoglycan 4 like Y 2 Testis 2 230 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332228
GOLGA2LY Golgi autoantigen, golgin subfamily A 2 like Y 2 Testis 10 184 Kuroda-Kawaguchi T, et al. Nature Genet. 29, 279 (2001) AF332229
Total: ~39
Grand total: ~78
Total: 13 single copy tanscription units; 15 multicopy transcription units families
Numbers in brackets correspond to splice variants.
*excluding pseudogenes