| Sequence name | Position on figure 2 |
|---|---|
| Contig1 | 1 - 6322706 |
| Contig2 | 6347741 - 6624107 |
| RP11-71C4 | Inside major TSPY array (between 6624107 and 7235125) |
| Contig3 | 7235126 - 8048356 |
| RP11-1126J10 | Middle part of Y centromere (alpha satellite/satellite 3 boundary) |
| Contig4 | 8997311 - 17479185 |
| Contig5 | 17479186 - 19109993 |
| Contig6 | 19130021 - 24008803 |
| RP11-242E13 | DYZ1 sequence, is inside major heterochromatic region |
| RP11-57J19 | Clone, spanning the boundary of 2nd PAR |