Supplementary Information

Supplementary Information for

Hughes JF, Skaletsky H, Pyntikova T, Koutseva N, Raudsepp T, Brown LG, Bellot DW, Cho TJ, Dugan-Rocha S, Khan Z, Kremitzki C, Fronick C, Graves-Lindsay TA, Fulton L, Warren WC, Wilson RK, Owens E, Womack JE, Murphy WJ, Muzny DM, Worley KC, Chowdhary BP, Gibbs RA, Page DC

Sequence analysis in Bos taurus reveals pervasiveness of X-Y arms races in mammalian lineages

Files

Supplemental Material: Supplemental Methods, References, and Figures
Supplemental File S1: Model bull MSY sequence
Supplemental File S2: Long-rage PCR products for satellite FISH
Supplemental File S3: HSFX/HSFY sequences
Supplemental Code S1:Triangular Dot Plot
Supplemental Code S2:Square Dot Plot

Tables

Supplemental Table S1: GenBank Accession Numbers for BACs in Bull MSY Assembly and Bull MSY AGP
Supplemental Table S2: Radiation hybrid panel mapping results
Supplemental Table S3: GenBank accession numbers and references for bull MSY genes
Supplemental Table S4: GenBank Accession Numbers for Bull HSFX-containing BACs
Supplemental Table: Positions of bull Y genes in model MSY sequence

Figures

Supplemental Figure S1: Annotated sequence of the bull MSY