Chimpanzee and human sequences were aligned using CLUSTALW with 
default parameters and adjusted by hand.  Simple sequence repeats 
were removed from the human sequence before the alignment using 
RepeatMasker.  The alignment files are in aligned fasta format.  
Each file contains chimpanzee and human sequences with gaps in each 
sequence relative to the other indicated as "-".  There are 5 
alignment files in total.  They are numbered sequentially 
(alignment1.fa - alignment5.fa) in the order of their position 
along the length of the chimpanzee sequence. 

alignment1.fa	1-2895466
alignment2.fa	2895467-4837796
alignment3.fa	4887674-7039289
alignment4.fa	7562270-8871408
alignment5.fa	9036402-9507369

There is a gap in the chimpanzee sequence between alignments 2 and 3.  
The sequence between aligments 3-4 and alignments 4-5 is deleted in 
human.